FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15623119
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1533356598.1466312840605No Hit
GCCCAT386450.24735777791873698No Hit
GCCGAT261560.16741855451526677No Hit
GCCACT257270.1646726239491615No Hit
GCCAAA250010.1600256645295987No Hit
GCCTAT235810.1509365703480848No Hit
GCTAAT212210.13583075184923063No Hit
ACCAAT208420.13340485981064343No Hit
GTCAAT202780.12979482522023933No Hit
TCCAAT165240.10576633257418061No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)