FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15620438
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAT1537139298.40564009792811No Hit
GCCAAA278790.17847770977996905No Hit
GCCACT249500.159726635066187No Hit
GCTAAT232080.1485745790226881No Hit
GTCAAT203400.13021401832650276No Hit
ACCAAT193400.12381214918557341No Hit
GCCCAT191010.1222821024608913No Hit
TCCAAT162420.10397915858697433No Hit
GACAAT159720.10225065391892339No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)