FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12073279
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTA1188564398.44585716937378No Hit
CTTGTC271180.2246117231284061No Hit
CTAGTA157550.13049478936086872No Hit
CTGGTA145590.12058861556997068No Hit
CCTGTA145400.12043124324386109No Hit
CTCGTA129700.10742731945480595No Hit
TTTGTA128530.10645823723613114No Hit
CTTTTA128360.10631743041803307No Hit
CATGTA126990.10518269311924291No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)