FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15055975
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT797500.5296900400007306No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG421170.27973611805279963No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA371130.24650014363068484No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG343280.22800250398928001No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA327190.2173157168499549No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC323580.21491799767202058No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT241790.16059404987056633No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC238790.15860148545677047No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG226240.1502659243257245No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT205950.13678954700708523No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC196210.13032035454362803No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT191130.12694627880293372No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT180070.11960035799740636No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG173280.11509052054084841No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA171670.11402117763877795No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA170100.1129784022622248No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC166860.11082643269532527No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC160400.10653577732428487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)