FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004828898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6541031
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAA639910897.83026559574478No Hit
AGTTAA237490.3630773191565672No Hit
AGTAAA171280.2618547443055995No Hit
AGACAA118600.1813169819864789No Hit
AGTCCA117990.1803844072899211No Hit
AGTCAC110140.16838324111290712No Hit
AGTGAA105500.1612895581751562No Hit
AGCCAA96880.14811120754511026No Hit
AGGCAA76100.11634251542302736No Hit
CGTCAA68240.10432606113623372No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)