FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12075790
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCC1183037997.96774372525525No Hit
AGTACC264930.2193893732832386No Hit
AGTTTC225290.18656336355633876No Hit
AGTTCT218190.18068383103714125No Hit
CGTTCC194770.1612896547555067No Hit
AGTCCC192110.15908690031873693No Hit
AGTGCC173580.14374214854680317No Hit
ATTTCC148850.12326315711021804No Hit
AGATCC142890.11832766220677901No Hit
AGTTCA140200.11610006467485771No Hit
AGCTCC134330.11123909905687329No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)