FastQCFastQC Report
Wed 8 May 2024
EGAF00004828909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12075790
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT509840.4222001210686837No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC356500.295218780717452No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC342730.28381580004289575No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA283370.23465959576971776No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG277120.22948395094648052No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG270590.22407643723516227No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA202470.16766604917773495No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA150050.1242568809162796No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG141930.11753268316192977No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT141760.11739190562273771No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC140010.11594272507223129No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC139280.1153382097568772No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA139050.11514774602738205No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG135790.11244812968758153No Hit
CGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATC133290.11037787175828663No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC133250.11034474763141791No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT132860.1100217873944479No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG131430.10883759985889123No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT130010.10766169335505171No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA128160.1061297024873735No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT122920.10179044186757139No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT121330.10047375782453985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)