FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12081604
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT511100.4230398546418174No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC356820.29534157881685247No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC343780.28454830997605945No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA284970.23587099858594934No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG280630.2322787603367897No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG267390.22131995056285572No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA202930.16796610781151244No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA151380.1252979322944205No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT142290.11777409688316219No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC141540.11715331838388346No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA140730.11648287760466242No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG140000.11587865319869779No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC139890.11578760568547024No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG135640.11226986085622406No Hit
CGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATC134540.11135938572394857No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT133280.11031647784516029No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT132080.10932323224631432No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC131240.10862796032712213No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG130960.10839620302072472No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA128160.10607862995675077No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT122770.1016173018086009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)