FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12084905
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTCC1189947098.46556509960152No Hit
AGTTTC226430.18736597432913207No Hit
AGTTCT217940.18034068120518945No Hit
CGTTCC178350.1475808043174522No Hit
ATTTCC143280.11856113060053017No Hit
AGATCC137870.11408447149563858No Hit
AGTTCA129750.1073653454454131No Hit
AGCTCC127730.10569383871863287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)