FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13538879
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1328032998.09031456740252No Hit
CGAAGT425560.31432439864482137No Hit
CGACGT341610.25231778790548315No Hit
CGAGGT325890.2407067822971163No Hit
CGCTGT192700.14233083846897518No Hit
TGATGT141160.1042626941270396No Hit
CGATGC138680.10243093242800973No Hit
CGATGA138630.10239400174859381No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)