FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13541348
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1333280798.45996868258611No Hit
CGCTGT222800.16453310261282703No Hit
CGATGA168530.12445585181032198No Hit
CGACGT159950.11811970270611168No Hit
CGATGC151630.11197555812021077No Hit
CGAAGT148790.10987827799713884No Hit
TGATGT137170.10129715298654166No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)