FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13545936
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGT1336336798.6522230726618No Hit
CGCTGT190610.14071379046822605No Hit
CGACGT151120.11156113538407386No Hit
CGAAGT141810.10468822530979034No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)