FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14079527
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1382011098.15748781901551No Hit
TGACCC394750.2803716346436922No Hit
TGAACA329690.23416269594852154No Hit
TGATCA312790.22215945180544772No Hit
TGACAA257650.1829962043469216No Hit
TGACTA226150.16062329366604433No Hit
TGAGCA212720.15108462095353062No Hit
TTACCA182600.12969185683581558No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)