EGAF00004828927 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828927
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14079527
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	73357	0.5210189234340046	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	38765	0.27532885160133574	No Hit
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	37519	0.2664791224875665	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	29023	0.20613618625114324	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC	24246	0.17220748964080967	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	17216	0.12227683501015339	No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC	14892	0.10577059868559505	No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG	14868	0.10560013841374075	No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG	14422	0.10243241836178162	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACCCG	13150	58.409336	3
ACCCGGC	13435	56.70698	5
CGACCGT	1935	56.119827	1
CACCCGG	13800	55.21026	4
CGCAAAA	7315	50.961727	1
GCGATTT	14510	48.450333	94
CGGCCCG	17210	44.59131	8
CCAGTAG	9495	41.62864	5
ACCGTTG	2605	41.322227	3
TAACCCC	9140	40.053104	9
CTCACCC	19320	40.05008	2
TAGCATA	10170	39.508457	9
GACCGTT	2765	39.103294	2
GTAGCAT	10245	39.035748	8
CAGTAGC	10365	38.35916	6
GCCAGTA	10425	38.00733	4
CTAACCC	9885	37.177055	8
CCGGCCC	22175	35.328075	7
CCCGGCC	23610	33.062958	6
AGTAGCA	12300	32.47595	7