FastQCFastQC Report
Wed 8 May 2024
EGAF00004828928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14080041
Total Bases84.4 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACCA1386546598.47602716497772No Hit
TGACCC392380.2786781657809093No Hit
TGACAA254690.1808872573595489No Hit
TGACTA225730.16031913543433574No Hit
TTACCA188740.1340479051161854No Hit
TGATCA167450.11892721051025348No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)