FastQCFastQC Report
Fri 10 May 2024
EGAF00004828930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14080041
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT737790.5239970537017613No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG386670.2746227798626439No Hit
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT377050.2677904133943928No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC291000.2066755345385713No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC242580.17228643013184408No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA171700.12194566762980306No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC151390.10752099372437908No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG148170.10523406856556738No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG145470.10331646051314765No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA141210.10029090114155208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)