EGAF00004828930 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004828930
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14080041
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	73779	0.5239970537017613	No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	38667	0.2746227798626439	No Hit
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	37705	0.2677904133943928	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	29100	0.2066755345385713	No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC	24258	0.17228643013184408	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	17170	0.12194566762980306	No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC	15139	0.10752099372437908	No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG	14817	0.10523406856556738	No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG	14547	0.10331646051314765	No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA	14121	0.10029090114155208	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACCCG	12765	59.0949	3
ACCCGGC	13395	56.030445	5
CACCCGG	13680	55.20825	4
CGCAAAA	7550	52.727093	1
CGACCGT	1940	51.118496	1
GCGATTT	13990	50.116306	94
CGGCCCG	16585	45.561554	8
TAACCCC	9475	42.057606	9
GACCGTT	2420	40.396645	2
ACCGTTG	2480	39.7982	3
CTAACCC	10075	39.50629	8
CTCACCC	19305	39.270092	2
CCAGTAG	9065	39.19366	5
TAGCATA	9845	36.753857	9
CAGTAGC	10070	35.55957	6
CCGGCCC	21895	35.306156	7
GCCAGTA	10110	35.236458	4
GTAGCAT	10275	34.666924	8
CCCGGCC	23385	32.735176	6
CGCAAGT	3880	32.706146	1