FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16141674
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1583828898.12047994526466No Hit
CAGCTC535040.3314650017092403No Hit
CAGTTC440510.2729023024501672No Hit
CAGGTC293930.18209387700433055No Hit
CAGATA266710.16523069416468206No Hit
CAGATT263320.16313054024012627No Hit
TAGATC240230.14882595200473012No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)