FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16141674
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG417590.25870303166821484No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA254090.15741242203255995No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG220160.1363922973540415No Hit
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA209020.12949090658131243No Hit
GTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGA175690.10884249056200739No Hit
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG174390.10803712180037833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)