FastQCFastQC Report
Fri 10 May 2024
EGAF00004828945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15622166
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT518140.33166975693383366No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC369240.23635646939099225No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC327990.20995168019594723No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG299590.19177238290772228No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA292800.18742599457719245No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA290230.1857808961958284No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG278280.17813150878053657No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC183270.11731407795820374No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA171390.10970949867003077No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG167730.10736667373781587No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA162620.10409568045813879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)