FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15630915
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCC1540247598.53853725133813No Hit
CTGTCC328350.21006447799121164No Hit
CCGTAC240280.15372100737544794No Hit
CCTTCC210850.1348929349305527No Hit
CCGTCT164530.105259353019321No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)