FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15630915
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT511590.3272936996970427No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC366140.23424092575514613No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC330560.21147834275856534No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG299120.19136435710897282No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA297150.19010403421680688No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA286710.1834249626461407No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG278960.17846683959320359No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC183640.11748512483114393No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA175230.11210476162144059No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG166140.10628936309870535No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA162300.1038326930957017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)