FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15588861
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAACTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT511790.328304935171338No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC366950.23539243822880965No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC328340.21062475314905946No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG295770.1897316295270065No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA293180.18807018678272902No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA290020.1860430983379735No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG273980.1757537000297841No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC184000.11803299804905568No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA173560.11133590837714186No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG166210.10662100329203011No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA161370.10351622225639191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)