FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14916959
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1465943198.2735891410575No Hit
ATGACA432450.2899049330362844No Hit
ATGTCC286510.1920699788743805No Hit
ATGCCA272400.18261094637318503No Hit
ATGGCA236020.1582225975146811No Hit
ATTTCA231520.15520589685873643No Hit
ATGTTA169330.11351509379358085No Hit
CTGTCA159590.10698561281826946No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)