FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14916959
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC306500.20547083356601037No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA290930.19503304929644172No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG277450.18599635488707852No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT262820.17618872586564058No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG202410.13569119550439201No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC196600.13179629976860566No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC192590.12910808429519716No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT179890.1205942846661977No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT172410.11557985779809411No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA170580.11435306619800992No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG151280.10141477227362493No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC150580.10094550772714467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)