FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14929067
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1472287598.61885541809143No Hit
ATGTCC290550.19462033360825562No Hit
ATTTCA251130.168215468521911No Hit
ATGTTA169100.11326896717658243No Hit
ATATCA165480.1108441672878821No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)