FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14929067
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC301160.20172727471850718No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA291750.1954241346763331No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG278740.1867095914299266No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT266210.17831656861075107No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG202890.13590266558519698No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC195200.13075164040726725No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC194980.1306042768781197No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT180770.12108593256363576No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT171540.11490336268167327No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA169390.11346321910136782No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG152140.10190857874775429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)