FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004828958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14935014
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1475656998.80519027300544No Hit
ATGTCC274980.18411767139957153No Hit
ATTTCA225140.15074642715433678No Hit
ATGTTA169180.11327742980354756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)