FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14935014
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC304710.2040239132015544No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA291950.19548023188997346No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG278210.18628037442750303No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT264850.17733495261537752No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG205100.1373282944361485No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC198650.13300958405529448No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC196140.13132896962801643No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT181600.12159345816481994No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT174940.11713413860877533No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA168740.11298282010314821No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG152040.10180104283799131No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC150640.10086364833672068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)