FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12833351
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1258079098.03199491699401No Hit
GTCTGC377030.29378920595252167No Hit
GTCAGC350790.27334248085320817No Hit
GTCGGC205020.1597556242325173No Hit
GTCCGT185500.14454525556107675No Hit
GCCCGC144930.11293231206720676No Hit
GTCCCC144660.11272192274644402No Hit
GTTCGC143670.11195049523698057No Hit
GTCCGA141710.1104232246121843No Hit
GTCCAC133450.10398686983625711No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)