FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12834937
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1262132998.33573004682454No Hit
GTCTGC235990.18386533568493557No Hit
GTCCGT189080.1473166560926633No Hit
GTCCGA164690.12831383589962303No Hit
GCCCGC158730.12367026032149592No Hit
GTTCGC156720.12210422224900674No Hit
GTCCCC145580.11342478735968864No Hit
GACCGC144990.11296510454239084No Hit
GTCCAC130830.1019327169272432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)