FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12817729
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1263517498.57576174375352No Hit
GTCTGC230560.1798758578840292No Hit
GTCCGT180500.1408205774985569No Hit
GTTCGC142280.11100250286146633No Hit
GTCCCC139620.10892725224569812No Hit
GCCCGC132790.10359869521348126No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)