FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13677784
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1343097698.19555565433699No Hit
ATCCCG371370.271513280221416No Hit
ATTACG228130.16678871372731138No Hit
ATCGCG225800.1650852214072104No Hit
ATCTCG209650.15327775317990108No Hit
ATCACC208100.15214452867511286No Hit
ATCACT188100.13752227700042638No Hit
ATCACA183900.13445160414874222No Hit
ATCATG177940.13009417314968566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)