FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004828973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13681674
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1346860598.44266863835523No Hit
ATTACG245850.17969292354137367No Hit
ATCACC221170.16165419523955915No Hit
ATCACA211800.1548056180844537No Hit
ATCCCG194400.14208787608884701No Hit
ATCACT190310.13909847581516707No Hit
ATCATG175880.1285515208153622No Hit
ATAACG149440.10922640021973919No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)