FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13681674
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC259580.18972824524250467No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG185810.13580940460940671No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA167980.12277737358747183No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC167810.12265311978636532No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG142630.1042489391283552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)