FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004828976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13701110
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACG1351946298.6742096078347No Hit
ATTACG225540.16461439985519422No Hit
ATCACC198470.1448568765596364No Hit
ATCCCG189570.13836105249866618No Hit
ATCACT174210.12715028198445236No Hit
ATCATG168980.12333307301379232No Hit
ATCACA163960.11966913629625629No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)