FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15319322
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC336080.21938307713618138No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT270340.17646995082419445No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC256570.1674813023709535No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT223190.14569182630928443No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG216740.14148145720809316No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG209870.13699692453752196No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG208800.1362984602060065No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA184330.120325168437611No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA177730.1160168837759269No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC170720.11144096324889576No Hit
CGTGCACCCACTGCCTCTTCCCTTCTCGCTTGGGAACTCTAGTCTCGCCT161830.10563783436368789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)