FastQCFastQC Report
Sun 15 May 2022
EGAF00004828987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15297515
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC335870.21955853614132756No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT268270.1753683523108165No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC257160.16810573482032867No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT225340.14730497077466503No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG219440.1434481352036589No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG209040.13664964538358026No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG208570.13634240593978827No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA184890.12086276758022463No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA175720.11486832992155915No Hit
AGGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACAC172640.1128549310133051No Hit
CGTGCACCCACTGCCTCTTCCCTTCTCGCTTGGGAACTCTAGTCTCGCCT163710.10701738158125683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)