FastQCFastQC Report
Tue 10 May 2022
EGAF00004828991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13574292
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1333173198.21308544121491No Hit
TAGCTC349510.2574793587761336No Hit
TAGCTA308420.22720890341831457No Hit
TAGTTT247600.1824036200193719No Hit
TAGCCT225760.16631438310005414No Hit
TAACTT193170.14230576445533955No Hit
TCGCTT178140.1312333637732266No Hit
TATCTT170680.1257376811991373No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)