FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004828994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004828994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13577329
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1336012398.40023026620331No Hit
TAGCTC328460.24191797959672331No Hit
TAGCTA269830.198735701256116No Hit
TAGTTT248330.1829004806468194No Hit
TAGCCT225100.16579107716989108No Hit
TCGCTT159740.1176520065176295No Hit
TATCTT144210.10621382158449574No Hit
TAACTT136450.1004984117273729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)