FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10087749
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG226720.22474786000325742No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA157430.15606058398161968No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA146390.14511661620446742No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC144120.1428663619604334No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA139920.1387028959582559No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC136160.13497560258487795No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG127750.12663875756623205No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC127380.1262719760374688No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC125840.1247453718366704No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG116090.11508018290304407No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA110520.10955863394301346No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT105200.1042849103402553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)