FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10093340
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC991457398.22886180392219No Hit
GTGGCT370200.3667765080736406No Hit
GTGGTC141470.1401617304083683No Hit
GTGTCC135340.13408841869985555No Hit
GTTGCC132580.13135394230254802No Hit
GTAGCC113780.11272779872668513No Hit
GTGGCA110380.10935924084594396No Hit
GTGACC102330.10138368468713033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)