FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10092433
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC993058398.39632326516312No Hit
GTGGCT365010.3616670033875875No Hit
GTGGTC141340.14004551727021622No Hit
GTGTCC135890.13464543187950814No Hit
GTTGCC118950.11786057930728894No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)