FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10161700
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG981432196.58148734955765No Hit
GTTTTG1285461.2650048712321758No Hit
GTTACG264660.2604485469950894No Hit
GTTCCG243160.23929066986823072No Hit
GTTTCC208930.20560536130765522No Hit
GTTGCG177880.17504945038723835No Hit
GCTTCG163180.16058336695631636No Hit
GGTTCG138230.13603038861607802No Hit
GTTTCA137950.13575484416977474No Hit
GATTCG136730.13455425765373905No Hit
GTTTAG131470.12937795841247035No Hit
GTTTCT123520.12155446431207377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)