FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10184278
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG985770396.79334165858394No Hit
GTTTTG1303481.2798943626637058No Hit
GTTTCC225120.2210465975103979No Hit
GCTTCG172190.16907433202432218No Hit
GTTTCA166780.16376222251592112No Hit
GATTCG155960.15313800349911894No Hit
GGTTCG150340.14761969380647308No Hit
GTTTAG138260.13575827368420224No Hit
GTTTCT138250.13574845462780966No Hit
GTTCCG130680.12831542893860517No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)