FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10255782
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG993006896.82409395987551No Hit
GTTTTG1339021.305624476027279No Hit
GTTTCC237660.23173269478621913No Hit
GCTTCG168060.16386853776728094No Hit
GTTTCA162330.15828144552994594No Hit
GGTTCG156600.15269435329261094No Hit
GTTTAG155750.15186555252441988No Hit
GATTCG145780.14214420704340244No Hit
GTTTCT145670.14203695047340126No Hit
GTTCCG133640.1303069819541796No Hit
GTTTGG103270.10069441803657683No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)