FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15111056
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGC1487191898.4174633460428No Hit
TTAAGC386100.255508284794921No Hit
TTATGC359140.23766704325627538No Hit
TTACGC276520.182991843852607No Hit
TTAGGA185520.12277103598848418No Hit
TTAGTC162140.10729892073724034No Hit
TTAGCC151320.10013860050548419No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)