EGAF00004829032 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004829032
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15078606
Sequences flagged as poor quality	0
Sequence length	100
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC	29200	0.19365185349361871	No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG	26629	0.17660120570827303	No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA	22392	0.14850179121332568	No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA	21482	0.14246675057362732	No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA	20822	0.13808968813164824	No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC	18571	0.12316125243938332	No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT	16651	0.11042797988089881	No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC	16287	0.10801396362501944	No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	15594	0.10341804806094144	No Hit
CCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTAC	15111	0.10021483418294769	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	1500	44.187107	1
ACCGTTG	1870	36.197258	3
CGACCTA	1165	30.258062	4
GTAGGTC	3245	28.972015	2
GCGATTT	3300	28.763544	94
GCGGGTC	5800	28.609493	2
CATTCTT	10880	28.039522	3
GACCGTT	2365	27.826612	2
GTCGTAA	1225	26.856297	5
ATTCTTG	11430	26.440554	4
CCGTTGA	2625	25.96238	4
CTTAGCG	1540	25.326927	8
ACCCGGC	4350	25.17392	5
TAACCCC	4925	23.757984	9
TCGTAAG	1410	23.330278	6
AGTAGGT	4050	23.32968	1
CTTGGCA	13090	23.19146	7
TCTTGGC	13245	23.062288	6
CACCCGG	4950	22.693344	4
TCACCCG	4870	22.489601	3