FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10912733
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1068318697.89652143051609No Hit
GATTAG379390.34765809811346066No Hit
GATAAG306830.28116696339954433No Hit
GATCCG211890.19416767550346922No Hit
GATCAA169970.15575383361803136No Hit
GATGAG169750.15555223425699136No Hit
GCTCAG160440.14702091584207183No Hit
GATCAT126320.11575468766623356No Hit
GAACAG126230.11567221520035356No Hit
GACCAG109320.10017655522223444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)