FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10929444
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1072906898.16664049882135No Hit
GATTAG281910.25793626830422484No Hit
GATCCG212550.1944746686107729No Hit
GATCAA194660.17810604089283955No Hit
GAACAG167590.15333808380371408No Hit
GCTCAG165350.15128857424037306No Hit
GACCAG129390.11838662607173796No Hit
GATCAT128290.11738017048259729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)